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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs7692995 1 rs11933767 chr4:17967896 NCAPG chr4:17812525-17846485:+ 0.1 4.42 1.08E-5 Height
BRCA cis rs7692995 1 rs11936911 chr4:17948668 NCAPG chr4:17812525-17846485:+ 0.08 3.63 0.0003 Height
BRCA cis rs7692995 1 rs11936915 chr4:17948497 NCAPG chr4:17812525-17846485:+ 0.09 4.06 5.19E-5 Height
BRCA cis rs7692995 1 rs11938188 chr4:17973698 NCAPG chr4:17812525-17846485:+ 0.09 4.4 1.21E-5 Height
BRCA cis rs28595532 1 rs11938970 chr4:119660152 METTL14 chr4:119606574-119632075:+ -0.24 -5 6.76E-7 Cannabis dependence
BRCA cis rs3796619 1 rs11939380 chr4:1086871 CRIPAK chr4:1385340-1389782:+ -0.12 -3.79 0.00016 Recombination rate (males)
BRCA cis rs3796619 1 rs11939380 chr4:1086871 KIAA1530 chr4:1341104-1381836:+ -0.12 -4.16 3.48E-5 Recombination rate (males)
BRCA cis rs11097912 1 rs11942153 chr4:106960172 TBCK chr4:106967233-107237861:- 0.25 7.76 1.97E-14 Airflow obstruction
BRCA cis rs7692995 1 rs11945359 chr4:17960008 NCAPG chr4:17812525-17846485:+ 0.1 4.44 1.01E-5 Height
BRCA cis rs7714584 1 rs11957134 chr5:150230950 LOC134466 chr5:150310000-150326146:- -0.34 -7.87 8.62E-15 Crohn's disease
BRCA cis rs7762018 1 rs11961560 chr6:170130121 WDR27 chr6:169857307-170102159:- -0.12 -3.63 0.000302 Thiazide-induced adverse metabolic effects in hypertensive patients
BRCA cis rs742132 1 rs11962024 chr6:25610203 SCGN chr6:25652429-25702006:+ 0.19 5.27 1.67E-7 Uric acid levels
BRCA cis rs853679 1 rs11965538 chr6:28239915 HIST1H4J chr6:27791903-27792257:+ -0.18 -3.51 0.000465 Depression
BRCA cis rs853679 1 rs11965538 chr6:28239915 ZNF323 chr6:28292517-28324048:- 0.2 3.64 0.000284 Depression
BRCA cis rs853679 1 rs11965538 chr6:28239915 ZNF389 chr6:28129551-28137375:+ -0.2 -3.6 0.000338 Depression